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SRX13858054: MinION of P_thiaminolyticus_Mbale2
1 OXFORD_NANOPORE (MinION) run: 96,000 spots, 546.9M bases, 469.7Mb downloads

Design: Long read sequencing libraries of the type strain and clinical isolate libraries were prepared using Hyper Prep kit (Kapa Biosystems, USA) and 1D Sequencing kit (Oxford Nanopore Technologies, UK), and then sequenced on a MinION with the SQK-LSK109 SpotON flow cell
Submitted by: Pennsylvania State University College of Medicine
Study: Identification of type IV pili as a critical virulence factor in a clinical isolate of Paenibacillus thiaminolyticus
show Abstracthide Abstract
Hydrocephalus preceded by an infection, or postinfectious hydrocephalus (PIH), accounts for 60% of the hydrocephalus cases in LMIC. Since even children who undergo surgical treatment for hydrocephalus early in life suffer poor long-term outcomes, prevention of hydrocephalus remains paramount. Our previous studies implicated a novel bacterial pathogen Paenibacillus thiaminolyticus as a causative agent of PIH in Uganda. Here we report the isolation of three P. thiaminolyticus strains, Mbale, Mbale2, and Mbale3, from patients with PIH and demonstration that the three clinical isolates exhibit virulence in a mouse infection model while a related reference strain, B-4156, does not. We constructed complete genome assemblies of the clinical isolates and the reference strain and applied comparative genomics and proteomics to identify potential virulence factors.
Sample:
SAMN25159603 • SRS11732980 • All experiments • All runs
Library:
Name: Mbale2
Instrument: MinION
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: SINGLE
Runs: 1 run, 96,000 spots, 546.9M bases, 469.7Mb
Run# of Spots# of BasesSizePublished
SRR1769487696,000546.9M469.7Mb2022-03-15

ID:
19311694

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